The online tools run on our dedicated server for bioinformatics tools: mirna.imbb.forth.gr
MiRduplexSVM
Relevant publication:
MiRduplexSVM: A High-Performing MiRNA-Duplex Prediction and Evaluation Methodology.
Karathanasis N, Tsamardinos I, Poirazi P.
PLoS One. 2015 May 11;10(5):e0126151. doi: 10.1371/journal.pone.0126151.
SSCprofiler: a Web-based tool for computational identification of novel miRNA precursors
Relevant publication:
Prediction of novel microRNA genes in cancer-associated genomic regions–a combined computational and experimental approach.
Oulas A, Boutla A, Gkirtzou K, Reczko M, Kalantidis K, Poirazi P.
Nucleic Acids Res. 2009 Jun;37(10):3276-87. doi: 10.1093/nar/gkp120.
Mature Bayes: a Web-based tool for the computational identification of mature miRNAs
Relevant publication:
MatureBayes: a probabilistic algorithm for identifying the mature miRNA within novel precursors.
Gkirtzou K, Tsamardinos I, Tsakalides P, Poirazi P.
PLoS One. 2010 Aug 6; 5(8):e11843. doi: 10.1371/journal.pone.0011843
TargetProfiler: a Web-based tool for the computational identification of miRNA: mRNA interactions
Relevant publication:
A new microRNA target prediction tool identifies a novel interaction of a putative miRNA with CCND2.
Oulas A, Karathanasis N, Louloupi A, Iliopoulos I, Kalantidis K, Poirazi P.
RNA Biol. 2012 Sep; 9(9):1196-207. doi: 10.4161/rna.21725
Expression Profiling Suite 2.1: Compilation of Methods for Microarray Data Analysis
Relevant publication:
Grading of human astrocytic brain tumours by artificial neural network analysis of gene expression microarray data.
Petalidis LP, Oulas A, Wayland MT, Liu L, Plant K, Happerfield L, Renault-Mihara F, Freeman TC, Poirazi P, Collins PV.
Molecular Cancer Therapeutics, 2008 May; 7(5):1013-24. doi: 10.1158/1535-7163.mct-07-0177
ANN models for Growth Rate Prediction of Streptococcus macedonicus ACA-DC 198
Relevant publication:
Use of artificial neural networks and a gamma-concept-based approach to model growth of and bacteriocin production by Streptococcus macedonicus ACA-DC 198 under conditions simulating Kasseri cheese technology.
Poirazi P, Leroy F, Georgalaki MD, Aktypis A, De Vuyst L, Tsakalidou E.
Applied and Environmental Biology, 2007 Frb; 73(3):768-76. doi: 10.1128/AEM.01721-06
The CER classifier: a Feature Selection/Classification Tool
Relevant publication:
Individualized markers optimize class prediction of microarray data.
Pavlidis P, Poirazi P.
BMC Bioinformatics, 2006 Jul; 7:345. doi: 10.1186/1471-2105-7-345