Bioinformatic Tools

Relevant publication:

MiRduplexSVM: A High-Performing MiRNA-Duplex Prediction and Evaluation Methodology.
Karathanasis N, Tsamardinos I, Poirazi P.
PLoS One. 2015 May 11;10(5):e0126151. doi: 10.1371/journal.pone.0126151.

 


Relevant publication:

Prediction of novel microRNA genes in cancer-associated genomic regions–a combined computational and experimental approach.
Oulas A, Boutla A, Gkirtzou K, Reczko M, Kalantidis K, Poirazi P.
Nucleic Acids Res. 2009 Jun;37(10):3276-87. doi: 10.1093/nar/gkp120.

 


Alternative link

Relevant publication:

MatureBayes: a probabilistic algorithm for identifying the mature miRNA within novel precursors.
Gkirtzou K, Tsamardinos I, Tsakalides P, Poirazi P.
PLoS One. 2010 Aug 6;5(8):e11843. doi: 10.1371/journal.pone.0011843

 


Relevant publication:

A new microRNA target prediction tool identifies a novel interaction of a putative miRNA with CCND2.
Oulas A, Karathanasis N, Louloupi A, Iliopoulos I, Kalantidis K, Poirazi P.
RNA Biol. 2012 Sep;9(9):1196-207. doi: 10.4161/rna.21725

 


Neuroscience

Relevant publication:

A Simple Method to Simultaneously Detect and Identify Spikes from Raw Extracellular Recordings
Panagiotis C. Petrantonakis and Panayiota Poirazi
Front.Neurosci., 02 December 2015 | http://dx.doi.org/10.3389/fnins.2015.00452