{"id":471,"date":"2020-10-23T10:21:34","date_gmt":"2020-10-23T10:21:34","guid":{"rendered":"http:\/\/139.91.162.68\/?page_id=471"},"modified":"2025-01-03T13:25:26","modified_gmt":"2025-01-03T13:25:26","slug":"online-services-2","status":"publish","type":"page","link":"https:\/\/dendrites.gr\/?page_id=471","title":{"rendered":"Bioinformatic Tools"},"content":{"rendered":"
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The online tools run on our dedicated server for bioinformatics tools:\u00a0mirna.imbb.forth.gr<\/a><\/p>\n

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MiRduplexSVM<\/h3>\n

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Run the tool online<\/a><\/p>\n

Relevant publication:<\/p>\n<\/div>\n

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MiRduplexSVM: A High-Performing MiRNA-Duplex Prediction and Evaluation Methodology.<\/strong>
\nKarathanasis N, Tsamardinos I, Poirazi P.
\nPLoS One.<\/strong> 2015 May 11;10(5):e0126151. doi: 10.1371\/journal.pone.0126151<\/a>.<\/p>\n<\/div>\n<\/div>\n<\/div>\n<\/article>\n

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SSCprofiler: a Web-based tool for computational identification of novel miRNA precursors<\/h3>\n<\/div>\n
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Run the tool online<\/a><\/p>\n<\/div>\n

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Relevant publication:<\/p>\n

Prediction of novel microRNA genes in cancer-associated genomic regions\u2013a combined computational and experimental approach.<\/strong>
\nOulas A, Boutla A, Gkirtzou K, Reczko M, Kalantidis K, Poirazi P.
\nNucleic Acids Res.<\/strong>\u00a02009 Jun;37(10):3276-87. doi: 10.1093\/nar\/gkp120<\/a>.<\/p>\n

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Mature Bayes: a Web-based tool for the computational identification of mature miRNAs<\/h3>\n<\/div>\n<\/div>\n
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Run the tool online<\/a><\/p>\n

Relevant publication:<\/p>\n

MatureBayes: a probabilistic algorithm for identifying the mature miRNA within novel precursors.<\/strong>
\nGkirtzou K, Tsamardinos I, Tsakalides P, Poirazi P.
\nPLoS One.<\/strong> 2010 Aug 6; 5(8):e11843. doi: 10.1371\/journal.pone.0011843<\/a><\/p>\n<\/div>\n<\/div>\n<\/div>\n<\/article>\n

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TargetProfiler: a Web-based tool for the computational identification of miRNA: mRNA interactions<\/h3>\n<\/div>\n
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Run the tool online<\/a><\/p>\n

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Relevant publication:<\/p>\n

A new microRNA target prediction tool identifies a novel interaction of a putative miRNA with CCND2.<\/strong>
\nOulas A, Karathanasis N, Louloupi A, Iliopoulos I, Kalantidis K, Poirazi P.
\nRNA Biol.<\/strong> 2012 Sep; 9(9):1196-207. doi: 10.4161\/rna.21725<\/a><\/p>\n

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Expression Profiling Suite 2.1: Compilation of Methods for Microarray Data Analysis<\/h3>\n<\/div>\n

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Download the code<\/a><\/p>\n

Relevant publication:<\/p>\n

Grading of human astrocytic brain tumors by artificial neural network analysis of gene expression microarray data.<\/strong>
\nPetalidis LP, Oulas A, Wayland MT, Liu L, Plant K, Happerfield L, Renault-Mihara F, Freeman TC, Poirazi P,\u00a0 Collins PV.
\nMolecular Cancer Therapeutics<\/strong>, 2008 May; 7(5):1013-24. doi: 10.1158\/1535-7163.mct-07-0177<\/a><\/p>\n

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ANN models for Growth Rate Prediction of Streptococcus macedonicus ACA-DC 198<\/h3>\n<\/div>\n

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Download the code<\/a><\/p>\n

Relevant publication:<\/p>\n

Use of artificial neural networks and a gamma-concept-based approach to model growth of and bacteriocin production by Streptococcus macedonicus ACA-DC 198 under conditions simulating Kasseri cheese technology.<\/strong>
\nPoirazi P, Leroy F, Georgalaki MD, Aktypis A, De Vuyst L, Tsakalidou E.
\nApplied and Environmental Biology<\/strong>, 2007 Frb; 73(3):768-76. doi: 10.1128\/AEM.01721-06<\/a><\/p>\n

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The CER classifier: a Feature Selection\/Classification Tool<\/h3>\n<\/div>\n

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Download the code<\/a><\/p>\n

Relevant publication:<\/p>\n

Individualized markers optimize class prediction of microarray data.<\/strong>
\nPavlidis P, Poirazi P.
\nBMC Bioinformatics<\/strong>, 2006 Jul; 7:345. doi: 10.1186\/1471-2105-7-345<\/a><\/p>\n<\/div>\n<\/div>\n<\/article>\n<\/section>\n","protected":false},"excerpt":{"rendered":"

The online tools run on our dedicated server for bioinformatics tools:\u00a0mirna.imbb.forth.gr MiRduplexSVM Run the tool online Relevant publication: MiRduplexSVM: A High-Performing MiRNA-Duplex Prediction and Evaluation Methodology. Karathanasis N, Tsamardinos I, Poirazi P. PLoS One. 2015 May 11;10(5):e0126151. doi: 10.1371\/journal.pone.0126151. SSCprofiler: a Web-based tool for computational identification of novel miRNA precursors Run the tool online Relevant […]<\/p>\n","protected":false},"author":5,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"footnotes":""},"class_list":["post-471","page","type-page","status-publish","hentry","post"],"_links":{"self":[{"href":"https:\/\/dendrites.gr\/index.php?rest_route=\/wp\/v2\/pages\/471","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/dendrites.gr\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/dendrites.gr\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/dendrites.gr\/index.php?rest_route=\/wp\/v2\/users\/5"}],"replies":[{"embeddable":true,"href":"https:\/\/dendrites.gr\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=471"}],"version-history":[{"count":24,"href":"https:\/\/dendrites.gr\/index.php?rest_route=\/wp\/v2\/pages\/471\/revisions"}],"predecessor-version":[{"id":2697,"href":"https:\/\/dendrites.gr\/index.php?rest_route=\/wp\/v2\/pages\/471\/revisions\/2697"}],"wp:attachment":[{"href":"https:\/\/dendrites.gr\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=471"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}