Journal Publications

Challenging the point neuron dogma: FS basket cells as 2-stage nonlinear integrators.
Tzilivaki A., Poirazi P.
bioRxiv | doi: https://doi.org/10.1101/251314
[Abstract][PDF]

Tags: Dendritic Computations


Hotspots of dendritic spine turnover facilitate clustered spine addition and learning and memory.
Frank A.C., Huang S., Zhou M., Gdalyahu A., Kastellakis G., Silva T.K., Lu E., Wen X., Poirazi P., Trachtenberg J.T., Silva A.J.
Nat Commun. 2018 January. | DOI: 10.1038/s41467-017-02751-2.
[Abstract][PDF]

Tags: Dendritic Plasticity


…with Love, from Post to Pre
Panayiota Poirazi, George Kastellakis
Neuron. 2017 September |  DOI: https://doi.org/10.1016/j.neuron.2017.09.022
[Abstract][PDF]

Tags: Dendritic Plasticity, Learning & Memory, Plasticity


Basal tree complexity shapes functional pathways in the prefrontal cortex
Papoutsi A., Kastellakis G., Poirazi P.
Journal of Neurophysiology, 2017 Jul, | DOI: 10.1152/jn.00099.2017. [Epub ahead of print]
[Abstarct][PDF]


Synaptic plasticity in dendrites: complications and coping strategies
Bartlett W Mel, Jackie Schiller and Panayiota Poirazi
Current Opinion in Neurobiology. 2017 May |  DOI: https://doi.org/10.1016/j.conb.2017.03.012
[Abstract][PDF]

Tags: Dendritic Computations


Pattern separation in the Hippocampus through the eyes of computational modeling 
Chavlis S., Poirazi P.
Synapse. 2017 Mar 18. doi: 10.1002/syn.21972. [Epub ahead of print] Review.
[Abstract][PDF]

Tags: Hippocampus, Learning & Memory


The perfect grant and how to get it
Poirazi, P.,
Nature, 2017 March | DOI: 10.1038/543151a
[Abstract][PDF]

Tags: FENS-Kavli Network of Excellence


A novel and simple spike sorting implementation
Petrantonakis P.C., Poirazi P.
IEEE Transactions on Neural Systems and Rehabilitation Engineering. 2016 Dec., DOI: 10.1109/TNSRE.2016.2640858
[Abstract][PDF]

Tags: Bioinformatics, Neural Engineering


In Vivo Imaging of Dentate Gyrus Mossy Cells in Behaving Mice
Danielson, N. B., Turi, G. F., Ladow, M., Chavlis, S., Petrantonakis, P. C., Poirazi, P., & Losonczy, A.
Neuron. 2017 Feb., DOI: http://dx.doi.org/10.1016/j.neuron.2016.12.019
[Abstract][PDF]

Tags: Dendritic Computations, Hippocampus


Dendrites of dentate gyrus granule cells contribute to pattern separation by controlling sparsity
Chavlis, S., Petrantonakis, C.P., Poirazi, P.
Hippocampus. 2016 Oct, DOI: http://dx.doi.org/10.1002/hipo.22675
[Abstract][PDF]

Tags: Dendritic Computations, Hippocampus


Linking Memories across Time via Neuronal and Dendritic Overlaps in Model Neurons with Active Dendrites
Kastellakis, G., Silva, A.J., Poirazi, P.
Cell Reports. 2016 Nov | http://dx.doi.org/10.1016/j.celrep.2016.10.015
[Abstract][PDF]

Tags: Dendritic Plasticity, Learning & Memory


CoMuS: Simulating coalescent histories and polymorphic data from multiple species
Papadantonakis, S., Poirazi, P., and Pavlidis, P.
Molecular Ecology Resources, 2016. | http://dx.doi.org/10.1111/1755-0998.12544

Tags: Bioinformatics


Balancing family with a successful career in neuroscience.
Poirazi, P., Belin, D., Gräff, J., Hanganu‐Opatz, I., and López‐Bendito, G.
European Journal of Neuroscience, 2016. | http://dx.doi.org/10.1111/ejn.13280
[Abstract][PDF]

Tags: FENS-Kavli Network of Excellence


Opening Up: open access publishing, data sharing, and how they can influence your neuroscience career
Spires-Jones, T.L., Poirazi, P., Grubb, M.S.
European Journal of Neuroscience, 04 March 2016 | http://dx.doi.org/10.1111/ejn.13234
[Abstract][PDF]

Tags: FENS-Kavli Network of Excellence


The road to independence: how to get funding in neuroscience
Yaksi, E., Poirazi, P., Hanganu-Opatz, I.
Eur J Neurosci. 10 January 2016 | http://doi: 10.1111/ejn.13169.
[Abstract] [PDF]

Tags: FENS-Kavli Network of Excellence


REMOD: A Tool for Analyzing and Remodeling the Dendritic Architecture of Neural Cells
Bozelos, P., Stefanou, S.S., Bouloukakis, G., Melachrinos, C., Poirazi, P.
Front. Neuroanat., 06 January 2016 | http://dx.doi.org/10.3389/fnana.2015.00156
[Abstract][PDF]

Tags: Neural Morphology & Function


A Simple Method to Simultaneously Detect and Identify Spikes from Raw Extracellular Recordings
Petrantonakis, P.C., and Poirazi, P.
Front. Neurosci., 02 December 2015 | http://dx.doi.org/10.3389/fnins.2015.00452
[Abstract][PDF]

Tags: Neural Engineering


Emerging applications of read profiles towards the functional annotation of the genome
Pundhir, S., Poirazi, P., Gorodkin, J.
Front Genet. 2015 May 19;6:188. doi: 10.3389/fgene.2015.00188. eCollection 2015.
[Abstract][PDF]

Tags: Bioinformatics


MiRduplexSVM: A High-Performing MiRNA-Duplex Prediction and Evaluation Methodology.
Karathanasis, N., Tsamardinos, I., Poirazi, P.
PLoS One. 2015 May 11;10(5):e0126151. doi: 10.1371/journal.pone.0126151. eCollection 2015.
[Abstract][PDF]

Tags: Bioinformatics


The Hitchhiker’s Guide to a Neuroscience Career
Joëls, M., Hoogenraad, C.C., Poirazi, P., Di Luca, M.
Neuron. 2015 May 6;86(3):613-6. doi: 10.1016/j.neuron.2015.04.002.
[Abstract][PDF]

Tags: FENS-Kavli Network of Excellence


A computational study on how theta modulated inhibition can account for the long temporal windows in the entorhinal-hippocampal loop
Cutsuridis, V., Poirazi, P.
Neurobiol Learn Mem. 2015 Apr;120:69-83. doi: 10.1016/j.nlm.2015.02.002. Epub 2015 Feb 24.
[Abstract][PDF]

Tags: Hippocampus


Dentate Gyrus Circuitry Features Improve Performance of Sparse Approximation Algorithms
Petrantonakis, P.C. and Poirazi, P.
PLoS One. 2015; 10(1): e0117023. Published online 2015 Jan 30. doi: 10.1371/journal.pone.0117023
[Abstract][PDF]

Tags: Hippocampus


Synaptic clustering within dendrites: An emerging theory of memory formation
Kastellakis, G., Cai, D.J., Mednick, S.C., Silva, A.J., Poirazi, P.
Prog Neurobiol. 2015 Mar;126:19-35. doi: 10.1016/j.pneurobio.2014.12.002. Epub 2015 Jan 8.
[Abstract][PDF]

Tags: Learning & Memory


A Simulation Study on the Effects of Dendritic Morphology on Layer V Prefontal Pyramidal Cell Firing Behavior
Psarrou, M., Stefanou, S.S., Papoutsi, A., Tzilivaki, A., Cutsuridis, V., Poirazi, P.
Front Cell Neurosci. 2014 Sep 16;8:287. doi: 10.3389/fncel.2014.00287. eCollection 2014.
[Abstract][PDF]

Tags: Dendritic Computations, Neural Morphology & Function


A compressed sensing perspective of hippocampal function
Petrantonakis, P.C. and Poirazi, P.
Front Syst Neurosci. 2014; 8: 141. doi: 10.3389/fnsys.2014.00141
[Abstract][PDF]

Tags: Hippocampus


Dendritic Nonlinearities Reduce Network Size Requirements and Mediate ON and OFF States of Persistent Activity in a PFC Microcircuit Model
Papoutsi, A., Sidiropoulou, K., Poirazi, P.
PLoS Comput Biol. 2014 Jul 31;10(7):e1003764. doi: 10.1371/journal.pcbi.1003764. eCollection 2014.
[Abstract][PDF]

Tags: Dendritic Computations, Prefrontal Cortex


GluA2 mRNA distribution and regulation by miR-124 in hippocampal neurons
Ho, V.M., Dallalzadeh, L.O., Karathanasis, N., Keles, M.F., Vangala, S., Grogan, T., Poirazi, P., Martin, K.C.
Mol Cell Neurosci. 2014 Jul;61:1-12. doi: 10.1016/j.mcn.2014.04.006. Epub 2014 Apr 28.
[Abstract][PDF]


Don’t use a cannon to kill the … miRNA mosquito.
Karathanasis, N., Tsamardinos, I., Poirazi, P.
Bioinformatics. 2014 Apr 1;30(7):1047-8. doi: 10.1093/bioinformatics/btu100. Epub 2014 Mar 10.
[Abstract][PDF]


Modulatory effects of inhibition on persistent activity in a cortical microcircuit model
Konstantoudaki, X., Papoutsi, A., Chalkiadaki, K., Poirazi, P., Sidiropoulou, K.
Front Neural Circuits. 2014 Jan 31;8:7. doi: 10.3389/fncir.2014.00007. eCollection 2014.
[Abstract][PDF]

Tags: Dendritic Computations, Learning & Memory, Prefrontal Cortex


Induction and modulation of persistent activity in a layer V PFC microcircuit model.
Papoutsi, A., Sidiropoulou, K., Cutsuridis, V., Poirazi, P.
Front Neural Circuits. 2013 Oct 9;7:161. doi: 10.3389/fncir.2013.00161. eCollection 2013.
[Abstract][PDF]

Tags: Dendritic Computations, Learning & Memory, Prefrontal Cortex