Journal Publications

…with Love, from Post to Pre
Panayiota Poirazi, George Kastellakis
Neuron. 2017 September |  DOI: https://doi.org/10.1016/j.neuron.2017.09.022
[Abstract][PDF]

Tags: Dendritic Plasticity, Learning & Memory, Plasticity


Basal tree complexity shapes functional pathways in the prefrontal cortex
Papoutsi A., Kastellakis G., Poirazi P.
Journal of Neurophysiology, 2017 Jul, | DOI: 10.1152/jn.00099.2017. [Epub ahead of print]
[Abstarct][PDF]


Synaptic plasticity in dendrites: complications and coping strategies
Bartlett W Mel, Jackie Schiller and Panayiota Poirazi
Current Opinion in Neurobiology. 2017 May |  DOI: https://doi.org/10.1016/j.conb.2017.03.012
[Abstract][PDF]

Tags: Dendritic Computations


Pattern separation in the Hippocampus through the eyes of computational modeling 
Chavlis S., Poirazi P.
Synapse. 2017 Mar 18. doi: 10.1002/syn.21972. [Epub ahead of print] Review.
[Abstract][PDF]

Tags: Hippocampus, Learning & Memory


The perfect grant and how to get it
Poirazi, P.,
Nature, 2017 March | DOI: 10.1038/543151a
[Abstract][PDF]

Tags: FENS-Kavli Network of Excellence


A novel and simple spike sorting implementation
Petrantonakis P.C., Poirazi P.
IEEE Transactions on Neural Systems and Rehabilitation Engineering. 2016 Dec., DOI: 10.1109/TNSRE.2016.2640858
[Abstract][PDF]

Tags: Bioinformatics, Neural Engineering


In Vivo Imaging of Dentate Gyrus Mossy Cells in Behaving Mice
Danielson, N. B., Turi, G. F., Ladow, M., Chavlis, S., Petrantonakis, P. C., Poirazi, P., & Losonczy, A.
Neuron. 2017 Feb., DOI: http://dx.doi.org/10.1016/j.neuron.2016.12.019
[Abstract][PDF]

Tags: Dendritic Computations, Hippocampus


Dendrites of dentate gyrus granule cells contribute to pattern separation by controlling sparsity
Chavlis, S., Petrantonakis, C.P., Poirazi, P.
Hippocampus. 2016 Oct, DOI: http://dx.doi.org/10.1002/hipo.22675
[Abstract][PDF]

Tags: Dendritic Computations, Hippocampus


Linking Memories across Time via Neuronal and Dendritic Overlaps in Model Neurons with Active Dendrites
Kastellakis, G., Silva, A.J., Poirazi, P.
Cell Reports. 2016 Nov | http://dx.doi.org/10.1016/j.celrep.2016.10.015
[Abstract][PDF]

Tags: Dendritic Plasticity, Learning & Memory


CoMuS: Simulating coalescent histories and polymorphic data from multiple species
Papadantonakis, S., Poirazi, P., and Pavlidis, P.
Molecular Ecology Resources, 2016. | http://dx.doi.org/10.1111/1755-0998.12544

Tags: Bioinformatics


Balancing family with a successful career in neuroscience.
Poirazi, P., Belin, D., Gräff, J., Hanganu‐Opatz, I., and López‐Bendito, G.
European Journal of Neuroscience, 2016. | http://dx.doi.org/10.1111/ejn.13280
[Abstract][PDF]

Tags: FENS-Kavli Network of Excellence


Opening Up: open access publishing, data sharing, and how they can influence your neuroscience career
Spires-Jones, T.L., Poirazi, P., Grubb, M.S.
European Journal of Neuroscience, 04 March 2016 | http://dx.doi.org/10.1111/ejn.13234
[Abstract][PDF]

Tags: FENS-Kavli Network of Excellence


The road to independence: how to get funding in neuroscience
Yaksi, E., Poirazi, P., Hanganu-Opatz, I.
Eur J Neurosci. 10 January 2016 | http://doi: 10.1111/ejn.13169.
[Abstract] [PDF]

Tags: FENS-Kavli Network of Excellence


REMOD: A Tool for Analyzing and Remodeling the Dendritic Architecture of Neural Cells
Bozelos, P., Stefanou, S.S., Bouloukakis, G., Melachrinos, C., Poirazi, P.
Front. Neuroanat., 06 January 2016 | http://dx.doi.org/10.3389/fnana.2015.00156
[Abstract][PDF]

Tags: Neural Morphology & Function


A Simple Method to Simultaneously Detect and Identify Spikes from Raw Extracellular Recordings
Petrantonakis, P.C., and Poirazi, P.
Front. Neurosci., 02 December 2015 | http://dx.doi.org/10.3389/fnins.2015.00452
[Abstract][PDF]

Tags: Neural Engineering


Emerging applications of read profiles towards the functional annotation of the genome
Pundhir, S., Poirazi, P., Gorodkin, J.
Front Genet. 2015 May 19;6:188. doi: 10.3389/fgene.2015.00188. eCollection 2015.
[Abstract][PDF]

Tags: Bioinformatics


MiRduplexSVM: A High-Performing MiRNA-Duplex Prediction and Evaluation Methodology.
Karathanasis, N., Tsamardinos, I., Poirazi, P.
PLoS One. 2015 May 11;10(5):e0126151. doi: 10.1371/journal.pone.0126151. eCollection 2015.
[Abstract][PDF]

Tags: Bioinformatics


The Hitchhiker’s Guide to a Neuroscience Career
Joëls, M., Hoogenraad, C.C., Poirazi, P., Di Luca, M.
Neuron. 2015 May 6;86(3):613-6. doi: 10.1016/j.neuron.2015.04.002.
[Abstract][PDF]

Tags: FENS-Kavli Network of Excellence


A computational study on how theta modulated inhibition can account for the long temporal windows in the entorhinal-hippocampal loop
Cutsuridis, V., Poirazi, P.
Neurobiol Learn Mem. 2015 Apr;120:69-83. doi: 10.1016/j.nlm.2015.02.002. Epub 2015 Feb 24.
[Abstract][PDF]

Tags: Hippocampus


Dentate Gyrus Circuitry Features Improve Performance of Sparse Approximation Algorithms
Petrantonakis, P.C. and Poirazi, P.
PLoS One. 2015; 10(1): e0117023. Published online 2015 Jan 30. doi: 10.1371/journal.pone.0117023
[Abstract][PDF]

Tags: Hippocampus


Synaptic clustering within dendrites: An emerging theory of memory formation
Kastellakis, G., Cai, D.J., Mednick, S.C., Silva, A.J., Poirazi, P.
Prog Neurobiol. 2015 Mar;126:19-35. doi: 10.1016/j.pneurobio.2014.12.002. Epub 2015 Jan 8.
[Abstract][PDF]

Tags: Learning & Memory


A Simulation Study on the Effects of Dendritic Morphology on Layer V Prefontal Pyramidal Cell Firing Behavior
Psarrou, M., Stefanou, S.S., Papoutsi, A., Tzilivaki, A., Cutsuridis, V., Poirazi, P.
Front Cell Neurosci. 2014 Sep 16;8:287. doi: 10.3389/fncel.2014.00287. eCollection 2014.
[Abstract][PDF]

Tags: Dendritic Computations, Neural Morphology & Function


A compressed sensing perspective of hippocampal function
Petrantonakis, P.C. and Poirazi, P.
Front Syst Neurosci. 2014; 8: 141. doi: 10.3389/fnsys.2014.00141
[Abstract][PDF]

Tags: Hippocampus


Dendritic Nonlinearities Reduce Network Size Requirements and Mediate ON and OFF States of Persistent Activity in a PFC Microcircuit Model
Papoutsi, A., Sidiropoulou, K., Poirazi, P.
PLoS Comput Biol. 2014 Jul 31;10(7):e1003764. doi: 10.1371/journal.pcbi.1003764. eCollection 2014.
[Abstract][PDF]

Tags: Dendritic Computations, Prefrontal Cortex


GluA2 mRNA distribution and regulation by miR-124 in hippocampal neurons
Ho, V.M., Dallalzadeh, L.O., Karathanasis, N., Keles, M.F., Vangala, S., Grogan, T., Poirazi, P., Martin, K.C.
Mol Cell Neurosci. 2014 Jul;61:1-12. doi: 10.1016/j.mcn.2014.04.006. Epub 2014 Apr 28.
[Abstract][PDF]


Don’t use a cannon to kill the … miRNA mosquito.
Karathanasis, N., Tsamardinos, I., Poirazi, P.
Bioinformatics. 2014 Apr 1;30(7):1047-8. doi: 10.1093/bioinformatics/btu100. Epub 2014 Mar 10.
[Abstract][PDF]


Modulatory effects of inhibition on persistent activity in a cortical microcircuit model
Konstantoudaki, X., Papoutsi, A., Chalkiadaki, K., Poirazi, P., Sidiropoulou, K.
Front Neural Circuits. 2014 Jan 31;8:7. doi: 10.3389/fncir.2014.00007. eCollection 2014.
[Abstract][PDF]

Tags: Dendritic Computations, Learning & Memory, Prefrontal Cortex


Induction and modulation of persistent activity in a layer V PFC microcircuit model.
Papoutsi, A., Sidiropoulou, K., Cutsuridis, V., Poirazi, P.
Front Neural Circuits. 2013 Oct 9;7:161. doi: 10.3389/fncir.2013.00161. eCollection 2013.
[Abstract][PDF]

Tags: Dendritic Computations, Learning & Memory, Prefrontal Cortex


Modeling regulatory cascades using Artificial Neural Networks: the case of transcriptional regulatory networks shaped during the yeast stress response
Manioudaki, M.E., Poirazi, P.
Front Genet. 2013 Jun 20;4:110. doi: 10.3389/fgene.2013.00110. eCollection 2013.
[Abstract][PDF]


Coding and Decoding with Dendrites
Papoutsi, A., Kastellakis, G., Psarrou, M., Anastasakis, S., Poirazi, P.
J. Physiol Paris. 2014 Feb;108(1):18-27. doi: 10.1016/j.jphysparis.2013.05.003. Epub 2013 May 31.
[Abstract][PDF]

Tags: Dendritic Computations, Learning & Memory